Bioconductor cheat sheet
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Aug 26, 2024 - HTML
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microarray
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Python library to access Gene Expression Omnibus Database (GEO)
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Jul 27, 2024 - Jupyter Notebook
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
workflow rna-seq pipeline nextflow shiny deseq2 microarray chip-seq atac-seq differential-expression limma gsea nf-core differential-abundance
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May 13, 2025 - Nextflow
🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips
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Jan 4, 2025 - R
R package for normalizing RNA-seq data to make them comparable to microarray data.
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May 4, 2023 - R
Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
machine-learning bioinformatics analysis cancer gene-expression rnaseq microarray normalization supplement
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Mar 20, 2023 - HTML
Microarray Analysis Pipeline in Python
pipeline microarray ncbi-submission differential-expression enrichment-analysis ncbi-geo ncbi-database microarray-studies differentially-expressed-genes microarray-experiments
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Aug 1, 2019 - Jupyter Notebook
Cross-platform GUI desktop application for making biological heatmaps
lightweight c-plus-plus rna-seq opengl heatmap computational-biology gui-application microarray r-programming
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Nov 10, 2022 - C
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
package r analysis hpc notebook dna expression microarray rna reproducibility large-scale affymetrix copy-number
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Mar 15, 2025 - R
analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GEO)
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Aug 1, 2021 - Python
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
bioinformatics microarray microarray-data aml acute-myeloid-leukemia geoparse microarray-data-analysis genetic-expression-omnibus
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May 27, 2021 - Python
UNet 2.0 - Pytorch implementation of the U-Net 2.0 for image semantic segmentation, with processing blocks for noisy images
cnn pytorch microarray image-segmentation unet unet-pytorch unet-image-segmentation unet-model unet2 microarray-image-segmentation-cnn microarray-deep-learning image-segmenation-unet
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Oct 4, 2019 - Python
Collection of gene expression datasets
rna-seq gene-expression microarray microarray-data datasets microarray-data-analysis rna-seq-datasets transciptomics
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Oct 1, 2023
Genomic data manipulation tool
bam-files bioinformatics genomics genome genetics microarray wgs genome-analysis whole-genome-sequencing sam-files cram-files
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Oct 6, 2024 - Python
SAGA: Simulated annealing aided genetic algorithm for gene selection from microarray data
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Sep 27, 2023 - Jupyter Notebook
Latex scripts to compile my PhD thesis
rna-seq microarray splines ridge-regression multivariate-timeseries cervical-cancer gene-regulatory-network-inference
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Mar 11, 2025 - TeX
Deconer: A Comprehensive and Systematic Cell Type Deconvolution Evaluator
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Sep 27, 2024 - R
R package for visualization of omics data
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Oct 11, 2024 - R
bimodal DNN for NSCLC patient overall survival prediction
bioinformatics deep-neural-networks deep-learning microarray biomarkers clinical-data prognostic-biomarkers overall-survival-prediction bimodal-multicast non-small-cell-lung-cancer
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May 20, 2020
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